Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015853714.1_cds_XP_016512340.1_24994
CDS Infomation

[gene=LOC107829384] [db_xref=GeneID:107829384] [protein=splicing factor U2af large subunit A isoform X1] [protein_id=XP_016512340.1] [location=join(58643..58705,59446..59726,59997..60104,60745..60815,61426..61496,61576..61620,61723..61782,62381..62441,62528..62640,63036..63482,63584..63719,63830..63897,64206..64343)] [gbkey=CDS]
Sequence

ATGCAGGACTATGAAGGCAATGGAGTATATATAGACAATAATGGCGCCTCTCCTTACAGT
CAGCATATTTCTCGTGACCATGAGAATGAAAGGGACTCATCAATAAGCAGGGATAAGGAG
AGGGACAAAGGGCGTGATAAGGACAGGGACAGGGATAGGAATAGAGATAGAGACAGGGAC
AGAGTGAAGGAAAGGGACAAAGATAGGCATAGGGACAGAGATGGGGAGAAGGACCGTGAT
CGTCATCACAGAGATCGTCATAGGGATCGGAGTGATAGGAGGGAGAGGGAGAGGACCAGA
GATAGAGATGAAGATGATCTTCATCGAAGTCGAGATTATGATAGGCGAAGAGACAATGAC
AAAGATAGAGAGGATCGACGTAGACATAGACCTATCTCAAGGGGTAGATCTGAGCATAGA
TCAAAATCTCGATCACGGTCGCCATCCAAGAGCAAAAGGATAAGTGGTTTTGATATGGCA
CCTCCTACCACTGCGTTGTTACCAGGCGCTACTGATGCTGCAGGTCAAGTTCCTGGGACT
AACCCAGCAATTCCTGGACTGTTTTCTAACATGTTTCCTTTAGCATCAAGCCAGTTTGGA
GCTCTCCCGATGATGCCAGTCCAGGCAATGACACAGCAGGCTACCAGACATGCTCGGCGA
GTTTATGTTGGTGGACTTCCTCCTACTGCAAATGAACAGTCTGTTGCTACCTTCTTTAGT
CATGTCATGTATGCAATTGGAGGAAACACTGCTGGTCCAGGGGATGCTGTTGTCAATGTT
TATATAAACCACGAGAAGAAGTTTGCTTTTGTTGAAATGAGATCTGTAGAGGAGGCTAGT
AACGCGATGGCTTTGGATGGTGTCATTTTTGAGGGCGGACCAGTTAAGGTTAGAAGACCC
AGTGACTACAATCCTTCGCTGGCTGCTACTCTTGGTCCTAGCCAACCGAGCCCTAACCTC
AACCTTGCAGCTGTTGGATTAACACCAGGTTCTTCGGGAGGGCTTGAAGGTCCTGATCGC
ATATTTGTTGGTGGTTTACCCTACTATTTTACAGAATCACAAATCAGGGAACTTTTAGAG
TCTTTTGGTCAACTTCGAGGATTTGATCTGGTCAAAGATAGAGAAACTGGGAACTCAAAA
GGCTATGCTTTTTGTGTGTACCAGGATGTGTCTGTTACTGATATTGCTTGTGCAGCGCTT
AATGGAATTAAGATGGGCGATAAAACTCTTACTGTTAGGCGTGCTAACCAGGGCACAACC
CAACCCAACCCTGAGCAAGAGAGTGTATTGTTGCATGCACAACAGCAGATAGCTTTGCAG
AGATTCATGTTACAACCTGGTGCATTAGCAACGAAGGTCTTGTGCTTGACTGAAGTGGTC
ACTGTGGATGAGCTCAATGATGATGATGACTATCAAGATATTTTGGAAGATATGAGGACT
GAATGTGAGAAATTCGGAGCTCTAGTAAATGTTGTCATTCCACGTCCAAATCCTAATGGT
GTGCCTACACCTGGACTAGGAAAGGTATTTTTGGAGTATGCAGATGTCGACAGTTCCAGC
AAAGCTCGGCAAGGACTGAATGGAAGAAAATTCGGTGGTAACCAAGTTGTAGCTGTCTTC
TACCCGGAGAACAAGTTCTCTGAGGGAGACTATGAGGCTTAG

Peptide Sequence

PEP ID

XP_016512340.1
PEP Infomation

PREDICTED: splicing factor U2af large subunit A isoform X1 [Nicotiana tabacum]
Sequence

MQDYEGNGVYIDNNGASPYSQHISRDHENERDSSISRDKERDKGRDKDRDRDRNRDRDRD
RVKERDKDRHRDRDGEKDRDRHHRDRHRDRSDRRERERTRDRDEDDLHRSRDYDRRRDND
KDREDRRRHRPISRGRSEHRSKSRSRSPSKSKRISGFDMAPPTTALLPGATDAAGQVPGT
NPAIPGLFSNMFPLASSQFGALPMMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFS
HVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGVIFEGGPVKVRRP
SDYNPSLAATLGPSQPSPNLNLAAVGLTPGSSGGLEGPDRIFVGGLPYYFTESQIRELLE
SFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDKTLTVRRANQGTT
QPNPEQESVLLHAQQQIALQRFMLQPGALATKVLCLTEVVTVDELNDDDDYQDILEDMRT
ECEKFGALVNVVIPRPNPNGVPTPGLGKVFLEYADVDSSSKARQGLNGRKFGGNQVVAVF
YPENKFSEGDYEA

Transcript Sequence

Gene sequence data has not been registered.